mipav.git
3 years agoRemoved old branch. release-current
mccreedy@NIH.GOV [Wed, 23 Dec 2015 21:14:20 +0000 (21:14 +0000)]
Removed old branch.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-current@13998 ba61647d-9d00-f842-95cd-605cb4296b96

4 years agoUpdating release-current tag
mccreedy@NIH.GOV [Wed, 21 May 2014 21:51:46 +0000 (21:51 +0000)]
Updating release-current tag

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-current@12794 ba61647d-9d00-f842-95cd-605cb4296b96

4 years agoNew release
mccreedy@NIH.GOV [Wed, 21 May 2014 21:51:20 +0000 (21:51 +0000)]
New release

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-current@12793 ba61647d-9d00-f842-95cd-605cb4296b96

5 years agoUpdating release-current tag
mccreedy@NIH.GOV [Fri, 5 Apr 2013 21:11:13 +0000 (21:11 +0000)]
Updating release-current tag

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-current@11583 ba61647d-9d00-f842-95cd-605cb4296b96

5 years agoUpdating release-current.
mccreedy@NIH.GOV [Fri, 5 Apr 2013 21:10:07 +0000 (21:10 +0000)]
Updating release-current.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-current@11582 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoUpdating release-current tag
mccreedy@NIH.GOV [Fri, 22 Mar 2013 21:10:55 +0000 (21:10 +0000)]
Updating release-current tag

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-current@11535 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoDon't know why trunk directory is sometimes showing up in tags...
mccreedy@NIH.GOV [Thu, 21 Feb 2013 18:47:35 +0000 (18:47 +0000)]
Don't know why trunk directory is sometimes showing up in tags...

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-current@11377 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoCreating new release-current tag. It should always point to the last release snapshot.
mccreedy@NIH.GOV [Thu, 21 Feb 2013 18:29:28 +0000 (18:29 +0000)]
Creating new release-current tag.  It should always point to the last release snapshot.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-current@11372 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoversion 6.0.1
mccreedy@NIH.GOV [Wed, 14 Nov 2012 21:38:15 +0000 (21:38 +0000)]
version 6.0.1

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-6.0.1@11207 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoversion 6.0.1
mccreedy@NIH.GOV [Wed, 14 Nov 2012 17:07:04 +0000 (17:07 +0000)]
version 6.0.1

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/tags/release-6.0.1@11206 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoversion 6.0.1
mccreedy@NIH.GOV [Wed, 14 Nov 2012 17:07:00 +0000 (17:07 +0000)]
version 6.0.1

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11205 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoRemoved non-UTF8 character.
mccreedy@NIH.GOV [Wed, 14 Nov 2012 17:00:26 +0000 (17:00 +0000)]
Removed non-UTF8 character.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11204 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoupdated imagej jar: Wed Nov 14 11:57:05 EST 2012
mccreedy@NIH.GOV [Wed, 14 Nov 2012 16:57:06 +0000 (16:57 +0000)]
updated imagej jar: Wed Nov 14 11:57:05 EST 2012

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11203 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoAdded check to avoid NPE when getting bounding box of quicklut temp VOI.
mccreedy@NIH.GOV [Wed, 14 Nov 2012 15:57:59 +0000 (15:57 +0000)]
Added check to avoid NPE when getting bounding box of quicklut temp VOI.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11202 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoReverted multi-paint related changes.
mccreedy@NIH.GOV [Wed, 14 Nov 2012 15:38:41 +0000 (15:38 +0000)]
Reverted multi-paint related changes.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11201 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoremove println
senseneyj@NIH.GOV [Wed, 14 Nov 2012 14:57:09 +0000 (14:57 +0000)]
remove println

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11200 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agouse mipav default instead of imagej default for lut error loading
senseneyj@NIH.GOV [Wed, 14 Nov 2012 14:56:46 +0000 (14:56 +0000)]
use mipav default instead of imagej default for lut error loading

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11199 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoaccounted for case of trying to load min/max of previous dataset to new dataset which...
senseneyj@NIH.GOV [Tue, 13 Nov 2012 23:37:26 +0000 (23:37 +0000)]
accounted for case of trying to load min/max of previous dataset to new dataset which does not have these min/max values available

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11198 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agorenamed to display value to "mipav" to distinguish it from imagej default
senseneyj@NIH.GOV [Tue, 13 Nov 2012 23:29:15 +0000 (23:29 +0000)]
renamed to display value to "mipav" to distinguish it from imagej default

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11197 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged Color paintColor to Color paintColor[] and added int paintColorIndex.
ilb@NIH.GOV [Tue, 13 Nov 2012 20:46:05 +0000 (20:46 +0000)]
Changed Color paintColor to Color paintColor[] and added int paintColorIndex.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11196 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged getPaintColor() to getPaintColor()[paintColorIndex].
ilb@NIH.GOV [Tue, 13 Nov 2012 20:44:43 +0000 (20:44 +0000)]
Changed getPaintColor() to getPaintColor()[paintColorIndex].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11195 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged getPaintColor() to getPaintColor()[paintColorIndex].
ilb@NIH.GOV [Tue, 13 Nov 2012 20:43:59 +0000 (20:43 +0000)]
Changed getPaintColor() to getPaintColor()[paintColorIndex].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11194 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged getPaintColor() to getPaintColor()[paintColorIndex].
ilb@NIH.GOV [Tue, 13 Nov 2012 20:43:14 +0000 (20:43 +0000)]
Changed getPaintColor() to getPaintColor()[paintColorIndex].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11193 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged from getSelectedPaintColor(frame) to getSelectedPaintColor(frame)[paintColorI...
ilb@NIH.GOV [Tue, 13 Nov 2012 20:42:20 +0000 (20:42 +0000)]
Changed from getSelectedPaintColor(frame) to getSelectedPaintColor(frame)[paintColorIndex].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11192 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoFor paint changed to 36 user selected colors followed by 36 fixed colors.
ilb@NIH.GOV [Tue, 13 Nov 2012 20:40:43 +0000 (20:40 +0000)]
For paint changed to 36 user selected colors followed by 36 fixed colors.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11191 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged getPaintColor() to getPaintColorIndex()[].
ilb@NIH.GOV [Tue, 13 Nov 2012 20:39:17 +0000 (20:39 +0000)]
Changed getPaintColor() to getPaintColorIndex()[].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11190 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged getPaintColor() to getPaintColor()[paintColorIndex].
ilb@NIH.GOV [Tue, 13 Nov 2012 20:38:21 +0000 (20:38 +0000)]
Changed getPaintColor() to getPaintColor()[paintColorIndex].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11189 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoIn makePaintImage 36 user selected colors followed by 36 fixed colors. getSelectedPa...
ilb@NIH.GOV [Tue, 13 Nov 2012 20:36:42 +0000 (20:36 +0000)]
In makePaintImage 36 user selected colors followed by 36 fixed colors.  getSelectedPaintColor changed from int to int[].  Added getPaintColorIndex.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11188 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged getPaintColor() to getPaintColor()[paintColorIndex].
ilb@NIH.GOV [Tue, 13 Nov 2012 20:33:18 +0000 (20:33 +0000)]
Changed getPaintColor() to getPaintColor()[paintColorIndex].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11187 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoIn performPaint(MouseEvent, boolean) only erase selected color.
ilb@NIH.GOV [Tue, 13 Nov 2012 17:42:26 +0000 (17:42 +0000)]
In performPaint(MouseEvent, boolean) only erase selected color.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11186 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoIn mouseMoved no longer change DROPPER_PAINT to DEFAULT. In mousePressedPaint and...
ilb@NIH.GOV [Tue, 13 Nov 2012 17:14:57 +0000 (17:14 +0000)]
In mouseMoved no longer change DROPPER_PAINT to DEFAULT.  In mousePressedPaint and mouseDragged paint color is changed by DROPPER_PAINT.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11185 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoIn makePaintImage colorArray[1] thru colorArray[37] are now always the same value...
ilb@NIH.GOV [Tue, 13 Nov 2012 17:11:29 +0000 (17:11 +0000)]
In makePaintImage colorArray[1] thru colorArray[37] are now always the same value; they no longer depend on the selected paint color.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11184 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoused new ImageJ display option
senseneyj@NIH.GOV [Tue, 13 Nov 2012 15:31:15 +0000 (15:31 +0000)]
used new ImageJ display option

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11183 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agochecked in new ImageJ display setting
senseneyj@NIH.GOV [Tue, 13 Nov 2012 15:28:19 +0000 (15:28 +0000)]
checked in new ImageJ display setting

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11182 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoIn makePaintImage colorArray[0] has original color for case when paintNumberMap is...
ilb@NIH.GOV [Fri, 9 Nov 2012 22:05:11 +0000 (22:05 +0000)]
In makePaintImage colorArray[0] has original color for case when paintNumberMap is present but is not set by any mask.  colorArray[1] has original color for first mask value.  Other colorArray have different color values for different mask values.  This fixes setColor.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11181 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoAdded short[] paintNumberMap to store mask value.
ilb@NIH.GOV [Fri, 9 Nov 2012 19:34:22 +0000 (19:34 +0000)]
Added short[] paintNumberMap to store mask value.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11180 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoIn paintComponent update makePaintImage call with new null for paintNumberMap variable.
ilb@NIH.GOV [Fri, 9 Nov 2012 19:33:30 +0000 (19:33 +0000)]
In paintComponent update makePaintImage call with new null for paintNumberMap variable.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11179 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoAdded short paintNumberMap[] that stores the mask value at each position.
ilb@NIH.GOV [Fri, 9 Nov 2012 19:31:37 +0000 (19:31 +0000)]
Added short paintNumberMap[] that stores the mask value at each position.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11178 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoIn handleMaskToPaint set bitSet for each intensity value > 0 and set the value of...
ilb@NIH.GOV [Fri, 9 Nov 2012 19:30:23 +0000 (19:30 +0000)]
In handleMaskToPaint set bitSet for each intensity value > 0 and set the value of paintNumberMap for that position to a short casting of the rounded intensity value.  This allows a different paint color for each different mask value.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11177 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoAdd input parameter short[] paintNumberMap to makePaintImage to allow a different...
ilb@NIH.GOV [Fri, 9 Nov 2012 19:27:19 +0000 (19:27 +0000)]
Add input parameter short[] paintNumberMap to makePaintImage to allow a different color for each different mask value.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11176 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agorvt to release appropriate build until implementation is finished
senseneyj@NIH.GOV [Fri, 9 Nov 2012 15:07:01 +0000 (15:07 +0000)]
rvt to release appropriate build until implementation is finished

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11175 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agouse byte/ubyte defaults if preferences can not be loaded
senseneyj@NIH.GOV [Fri, 9 Nov 2012 12:44:23 +0000 (12:44 +0000)]
use byte/ubyte defaults if preferences can not be loaded

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11174 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoremoved error printouts since these errors are expected for bad preferences values
senseneyj@NIH.GOV [Fri, 9 Nov 2012 12:40:41 +0000 (12:40 +0000)]
removed error printouts since these errors are expected for bad preferences values

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11173 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoStarted work.
ilb@NIH.GOV [Thu, 8 Nov 2012 23:14:10 +0000 (23:14 +0000)]
Started work.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11172 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoRemoved unneeded import statements.
ilb@NIH.GOV [Thu, 8 Nov 2012 22:48:35 +0000 (22:48 +0000)]
Removed unneeded import statements.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11171 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:51:22 +0000 (20:51 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11170 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:51:08 +0000 (20:51 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11169 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:50:34 +0000 (20:50 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11168 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:50:19 +0000 (20:50 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11167 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:50:04 +0000 (20:50 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11166 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:49:47 +0000 (20:49 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11165 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:49:24 +0000 (20:49 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11164 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:49:07 +0000 (20:49 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11163 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:48:52 +0000 (20:48 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11162 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:48:35 +0000 (20:48 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11161 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:48:20 +0000 (20:48 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11160 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:48:07 +0000 (20:48 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11159 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:47:49 +0000 (20:47 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11158 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:47:34 +0000 (20:47 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11157 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:47:10 +0000 (20:47 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11156 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:46:53 +0000 (20:46 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11155 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:46:36 +0000 (20:46 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11154 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversion.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:46:20 +0000 (20:46 +0000)]
int to long conversion.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11153 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoint to long conversions.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:45:55 +0000 (20:45 +0000)]
int to long conversions.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11152 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoIn readImage int start changed to long start.
ilb@NIH.GOV [Thu, 8 Nov 2012 20:41:35 +0000 (20:41 +0000)]
In readImage int start changed to long start.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11151 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoUpdated the multi-histogram display. Fixed the display panel gradient mag. graph...
abokinsky [Thu, 8 Nov 2012 16:43:58 +0000 (16:43 +0000)]
Updated the multi-histogram display. Fixed the display panel gradient mag. graph. Added a 'window' option for the triangle widget by moving the green control point up/down. Fixed reload error when the renderer is closed and then opened again. Fixed save / load file bug for triangle widget.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11150 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoupdated plugin to version 544d
senseneyj@NIH.GOV [Thu, 8 Nov 2012 16:17:03 +0000 (16:17 +0000)]
updated plugin to version 544d

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11149 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoadded average intensity value calculation
senseneyj@NIH.GOV [Thu, 8 Nov 2012 16:10:41 +0000 (16:10 +0000)]
added average intensity value calculation

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11148 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agomoved to privateSrc package to avoid source code from being published atm
senseneyj@NIH.GOV [Thu, 8 Nov 2012 15:18:42 +0000 (15:18 +0000)]
moved to privateSrc package to avoid source code from being published atm

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11147 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoversion 6.0.0
mccreedy@NIH.GOV [Wed, 7 Nov 2012 22:37:32 +0000 (22:37 +0000)]
version 6.0.0

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11145 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoupdated imagej jar: Wed Nov 7 17:25:34 EST 2012
mccreedy@NIH.GOV [Wed, 7 Nov 2012 22:25:35 +0000 (22:25 +0000)]
updated imagej jar: Wed Nov  7 17:25:34 EST 2012

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11144 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoComments on why multiexponential fitting should use nonlinear least squares.
ilb@NIH.GOV [Wed, 7 Nov 2012 22:11:55 +0000 (22:11 +0000)]
Comments on why multiexponential fitting should use nonlinear least squares.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11143 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged link to supplemental file to point to site.
mccreedy@NIH.GOV [Wed, 7 Nov 2012 18:46:28 +0000 (18:46 +0000)]
Changed link to supplemental file to point to site.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11142 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoComments as to why the maximum number of exponential terms is 3 added.
ilb@NIH.GOV [Wed, 7 Nov 2012 18:45:32 +0000 (18:45 +0000)]
Comments as to why the maximum number of exponential terms is 3 added.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11141 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoDir to organize license files.
mccreedy@NIH.GOV [Wed, 7 Nov 2012 15:45:40 +0000 (15:45 +0000)]
Dir to organize license files.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11140 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoDir to organize license files.
mccreedy@NIH.GOV [Wed, 7 Nov 2012 15:40:14 +0000 (15:40 +0000)]
Dir to organize license files.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11139 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoOnly do multiThreading if Preferences.isMultiThreadingEnabled().
ilb@NIH.GOV [Tue, 6 Nov 2012 22:52:56 +0000 (22:52 +0000)]
Only do multiThreading if Preferences.isMultiThreadingEnabled().

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11138 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoOnly do multiThreading if Preferences.isMultiThreadingEnabled(). Further double...
ilb@NIH.GOV [Tue, 6 Nov 2012 22:49:58 +0000 (22:49 +0000)]
Only do multiThreading if Preferences.isMultiThreadingEnabled().  Further double check on exponential initialization in self test.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11137 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoLicense changes.
mccreedy@NIH.GOV [Tue, 6 Nov 2012 22:38:03 +0000 (22:38 +0000)]
License changes.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11136 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoDir to organize license files.
mccreedy@NIH.GOV [Tue, 6 Nov 2012 21:51:45 +0000 (21:51 +0000)]
Dir to organize license files.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11135 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoDir to organize license files.
mccreedy@NIH.GOV [Tue, 6 Nov 2012 21:50:53 +0000 (21:50 +0000)]
Dir to organize license files.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11134 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoExplanatory text as to why only 3 exponential terms are implemented in MULTIEXPONENTI...
ilb@NIH.GOV [Mon, 5 Nov 2012 21:18:54 +0000 (21:18 +0000)]
Explanatory text as to why only 3 exponential terms are implemented in MULTIEXPONENTIAL_FIT.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11133 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged selection behavior for the widgets. The un-selected widget no longer displays...
abokinsky [Mon, 5 Nov 2012 16:40:09 +0000 (16:40 +0000)]
Changed selection behavior for the widgets. The un-selected widget no longer displays the control points. Added shading to the control points for the square classification widget.  Added a 'clear all' button.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11132 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoLower and upper bounds can be set for each parameter.
ilb@NIH.GOV [Fri, 2 Nov 2012 18:51:38 +0000 (18:51 +0000)]
Lower and upper bounds can be set for each parameter.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11131 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoUser supplied lower and upper bounds are now accepted.
ilb@NIH.GOV [Fri, 2 Nov 2012 18:51:02 +0000 (18:51 +0000)]
User supplied lower and upper bounds are now accepted.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11130 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agomultiProcessor operation added.
ilb@NIH.GOV [Thu, 1 Nov 2012 21:48:07 +0000 (21:48 +0000)]
multiProcessor operation added.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11129 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged a0, a1, and a2 in Rayleigh equation.
ilb@NIH.GOV [Thu, 1 Nov 2012 19:22:43 +0000 (19:22 +0000)]
Changed a0, a1, and a2 in Rayleigh equation.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11128 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged selfTest from true to false.
ilb@NIH.GOV [Thu, 1 Nov 2012 19:22:01 +0000 (19:22 +0000)]
Changed selfTest from true to false.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11127 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoChanged a0, a1, and a2 notation in Rayleigh. Added findInitialFromData to Lorentz...
ilb@NIH.GOV [Thu, 1 Nov 2012 19:20:45 +0000 (19:20 +0000)]
Changed a0, a1, and a2 notation in Rayleigh.  Added findInitialFromData to Lorentz and Rayleigh.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11126 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoupgraded to version 544c
senseneyj@NIH.GOV [Thu, 1 Nov 2012 17:59:58 +0000 (17:59 +0000)]
upgraded to version 544c

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11125 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoallowed intensity fields to vary
senseneyj@NIH.GOV [Thu, 1 Nov 2012 17:54:34 +0000 (17:54 +0000)]
allowed intensity fields to vary

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11124 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoadded methods for setting intensity fields
senseneyj@NIH.GOV [Thu, 1 Nov 2012 17:54:12 +0000 (17:54 +0000)]
added methods for setting intensity fields

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11123 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agocreated frame to allow image display in subsample = 0 mode
senseneyj@NIH.GOV [Thu, 1 Nov 2012 17:53:59 +0000 (17:53 +0000)]
created frame to allow image display in subsample = 0 mode

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11122 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoallowed for null getCurves in VOI
senseneyj@NIH.GOV [Thu, 1 Nov 2012 17:53:31 +0000 (17:53 +0000)]
allowed for null getCurves in VOI

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11121 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoaccounted for null VOIVector
senseneyj@NIH.GOV [Thu, 1 Nov 2012 13:29:32 +0000 (13:29 +0000)]
accounted for null VOIVector

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11120 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agorenamed variables, reassigned use of normalTissueStandardDeviation
senseneyj@NIH.GOV [Thu, 1 Nov 2012 13:10:49 +0000 (13:10 +0000)]
renamed variables, reassigned use of normalTissueStandardDeviation

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11119 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoSimplified Lorentz and Rayleigh equations.
ilb@NIH.GOV [Wed, 31 Oct 2012 22:10:03 +0000 (22:10 +0000)]
Simplified Lorentz and Rayleigh equations.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11118 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoSimplified Lorentz and Rayleigh equations. Added findIntialFromData to Laplace.
ilb@NIH.GOV [Wed, 31 Oct 2012 22:09:02 +0000 (22:09 +0000)]
Simplified Lorentz and Rayleigh equations.  Added findIntialFromData to Laplace.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11117 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoNew mipav license. Supplemental copyright file needs further revision.
mccreedy@NIH.GOV [Wed, 31 Oct 2012 20:33:26 +0000 (20:33 +0000)]
New mipav license.  Supplemental copyright file needs further revision.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11116 ba61647d-9d00-f842-95cd-605cb4296b96

6 years agoAdded Find initial from data checkbox.
ilb@NIH.GOV [Wed, 31 Oct 2012 19:55:57 +0000 (19:55 +0000)]
Added Find initial from data checkbox.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@11115 ba61647d-9d00-f842-95cd-605cb4296b96