mipav.git
13 months agoversion 8.0.1 release-8.0.1@15368
mccreedy@NIH.GOV [Fri, 9 Feb 2018 21:56:21 +0000 (21:56 +0000)]
version 8.0.1

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15368 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoupdated imagej jar: Fri Feb 9 16:48:16 EST 2018
mccreedy@NIH.GOV [Fri, 9 Feb 2018 21:48:19 +0000 (21:48 +0000)]
updated imagej jar: Fri Feb  9 16:48:16 EST 2018

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15367 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoIn DRIVE0() TSTPLT works with all 4 examples. Maximum misfit value of 9.86E-16.
ilb@NIH.GOV [Thu, 8 Feb 2018 21:35:21 +0000 (21:35 +0000)]
In DRIVE0() TSTPLT works with all 4 examples.  Maximum misfit value of 9.86E-16.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15366 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoExamples 2 and 4 added to PARFUN and DPARFN.
ilb@NIH.GOV [Thu, 8 Feb 2018 19:01:00 +0000 (19:01 +0000)]
Examples 2 and 4 added to PARFUN and DPARFN.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15365 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoAdded PARFUN and DPARFN for examples 1 and 3. Corrected PTFUN2.
ilb@NIH.GOV [Wed, 7 Feb 2018 23:14:07 +0000 (23:14 +0000)]
Added PARFUN and DPARFN for examples 1 and 3.  Corrected PTFUN2.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15364 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoPARGEN and supporting routines corrected so that ex01.f and ex03.f are correctly...
ilb@NIH.GOV [Wed, 7 Feb 2018 20:06:11 +0000 (20:06 +0000)]
PARGEN and supporting routines corrected so that ex01.f and ex03.f are correctly reproduced as ex01.java and ex03.java.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15363 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoPARGEN, PTFUN1, and PTFUN2 corrected so that ex01.f can be successfully created.
ilb@NIH.GOV [Tue, 6 Feb 2018 21:48:38 +0000 (21:48 +0000)]
PARGEN, PTFUN1, and PTFUN2 corrected so that ex01.f can be successfully created.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15362 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoCorrections put in PTFUN1 and PTFUN2.
ilb@NIH.GOV [Mon, 5 Feb 2018 23:10:37 +0000 (23:10 +0000)]
Corrections put in PTFUN1 and PTFUN2.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15361 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoInitial version of stroke core segmentation plugin.
mccreedy@NIH.GOV [Mon, 5 Feb 2018 16:39:50 +0000 (16:39 +0000)]
Initial version of stroke core segmentation plugin.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15360 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoAdded method for generating default centroids for an image.
mccreedy@NIH.GOV [Mon, 5 Feb 2018 16:39:23 +0000 (16:39 +0000)]
Added method for generating default centroids for an image.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15359 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoAdded method for retrieving the extracted VOI.
mccreedy@NIH.GOV [Mon, 5 Feb 2018 16:38:48 +0000 (16:38 +0000)]
Added method for retrieving the extracted VOI.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15358 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoDebugging PARGEN and supporting routines.
ilb@NIH.GOV [Fri, 2 Feb 2018 23:10:18 +0000 (23:10 +0000)]
Debugging PARGEN and supporting routines.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15357 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoStarted debugging PARGEN.
ilb@NIH.GOV [Wed, 31 Jan 2018 23:08:32 +0000 (23:08 +0000)]
Started debugging PARGEN.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15356 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoPorting continues.
ilb@NIH.GOV [Tue, 30 Jan 2018 23:14:38 +0000 (23:14 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15355 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoPorting continues.
ilb@NIH.GOV [Mon, 29 Jan 2018 23:12:36 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15354 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoTracking plugin now automatically re-twists the annotations back to the original...
abokinsky [Sat, 27 Jan 2018 01:57:40 +0000 (01:57 +0000)]
Tracking plugin now automatically re-twists the annotations back to the original worm volume when the user presses 'done'.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15353 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoPorting continues.
ilb@NIH.GOV [Fri, 26 Jan 2018 23:13:40 +0000 (23:13 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15352 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoPorting continues.
ilb@NIH.GOV [Thu, 25 Jan 2018 23:12:28 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15351 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoPorting continues.
ilb@NIH.GOV [Wed, 24 Jan 2018 23:22:45 +0000 (23:22 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15350 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoAdded the resliced/rotated image option to the annotation tracking plugin and to...
abokinsky [Wed, 24 Jan 2018 00:13:56 +0000 (00:13 +0000)]
Added the resliced/rotated image option to the annotation tracking plugin and to the untwisted->twisted conversion plugin.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15349 ba61647d-9d00-f842-95cd-605cb4296b96

13 months agoPorting continues.
ilb@NIH.GOV [Tue, 23 Jan 2018 21:06:53 +0000 (21:06 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15348 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Fri, 19 Jan 2018 23:14:05 +0000 (23:14 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15347 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Thu, 18 Jan 2018 22:57:20 +0000 (22:57 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15346 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Wed, 17 Jan 2018 23:08:19 +0000 (23:08 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15345 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Tue, 16 Jan 2018 22:02:08 +0000 (22:02 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15344 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Fri, 12 Jan 2018 23:11:52 +0000 (23:11 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15343 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoAdded an image reslice and rotation option after straightening.
abokinsky [Fri, 12 Jan 2018 00:50:47 +0000 (00:50 +0000)]
Added an image reslice and rotation option after straightening.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15342 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Thu, 11 Jan 2018 23:09:40 +0000 (23:09 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15341 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoContinued updates
mcmatt@NIH.GOV [Thu, 11 Jan 2018 15:04:56 +0000 (15:04 +0000)]
Continued updates

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15340 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Wed, 10 Jan 2018 20:30:25 +0000 (20:30 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15339 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Tue, 9 Jan 2018 22:50:43 +0000 (22:50 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15338 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoConvert NIH prostate data to nii format
ruida@NIH.GOV [Tue, 9 Jan 2018 17:40:17 +0000 (17:40 +0000)]
Convert NIH prostate data to nii format

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15337 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Mon, 8 Jan 2018 23:15:06 +0000 (23:15 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15336 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Fri, 5 Jan 2018 23:13:24 +0000 (23:13 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15335 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoSignificant updates to the transform GUI
mcmatt@NIH.GOV [Fri, 5 Jan 2018 13:31:54 +0000 (13:31 +0000)]
Significant updates to the transform GUI

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15334 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Thu, 4 Jan 2018 23:12:55 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15333 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Wed, 3 Jan 2018 23:20:22 +0000 (23:20 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15332 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Tue, 2 Jan 2018 23:12:29 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15331 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoFinished saving mapping file to CSV
mcmatt@NIH.GOV [Sun, 31 Dec 2017 14:14:00 +0000 (14:14 +0000)]
Finished saving mapping file to CSV

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15330 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Fri, 29 Dec 2017 23:27:08 +0000 (23:27 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15329 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agopreparing to saving mapping file
mcmatt@NIH.GOV [Fri, 29 Dec 2017 14:17:56 +0000 (14:17 +0000)]
preparing to saving mapping file

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15328 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Thu, 28 Dec 2017 23:23:11 +0000 (23:23 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15327 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Wed, 27 Dec 2017 22:22:25 +0000 (22:22 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15326 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoComments through 1926
mcmatt@NIH.GOV [Wed, 27 Dec 2017 14:28:01 +0000 (14:28 +0000)]
Comments through 1926

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15325 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Tue, 26 Dec 2017 22:21:23 +0000 (22:21 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15324 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoCommented through line 1230
mcmatt@NIH.GOV [Tue, 26 Dec 2017 15:27:24 +0000 (15:27 +0000)]
Commented through line 1230

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15323 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoUpdated row widths
mcmatt@NIH.GOV [Sun, 24 Dec 2017 16:58:48 +0000 (16:58 +0000)]
Updated row widths

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15322 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoMore updates to the PV Mappings editor
mcmatt@NIH.GOV [Sun, 24 Dec 2017 16:52:01 +0000 (16:52 +0000)]
More updates to the PV Mappings editor

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15321 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Fri, 22 Dec 2017 23:12:14 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15320 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoUpdates to the Mapping PVs column
mcmatt@NIH.GOV [Thu, 21 Dec 2017 22:13:16 +0000 (22:13 +0000)]
Updates to the Mapping PVs column

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15319 ba61647d-9d00-f842-95cd-605cb4296b96

14 months agoPorting continues.
ilb@NIH.GOV [Thu, 21 Dec 2017 21:58:34 +0000 (21:58 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15318 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoSignificant updates to the mapping tool.
mcmatt@NIH.GOV [Wed, 20 Dec 2017 23:33:01 +0000 (23:33 +0000)]
Significant updates to the mapping tool.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15317 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoPorting continues.
ilb@NIH.GOV [Wed, 20 Dec 2017 23:21:28 +0000 (23:21 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15316 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoconvert miccai promise 12 data from mgh to nii.gz
ruida@NIH.GOV [Wed, 20 Dec 2017 22:38:41 +0000 (22:38 +0000)]
convert miccai promise 12 data from mgh to nii.gz

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15315 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoPorting continues.
ilb@NIH.GOV [Tue, 19 Dec 2017 23:12:00 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15314 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoPorting continues.
ilb@NIH.GOV [Mon, 18 Dec 2017 23:16:36 +0000 (23:16 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15313 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoPorting continues.
ilb@NIH.GOV [Fri, 15 Dec 2017 23:17:23 +0000 (23:17 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15312 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoWork started.
ilb@NIH.GOV [Thu, 14 Dec 2017 23:17:44 +0000 (23:17 +0000)]
Work started.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15311 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agofix a typo for imageOrientation calling
ruida@NIH.GOV [Tue, 12 Dec 2017 22:08:53 +0000 (22:08 +0000)]
fix a typo for imageOrientation calling

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15310 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoComments corrected.
ilb@NIH.GOV [Tue, 12 Dec 2017 21:30:56 +0000 (21:30 +0000)]
Comments corrected.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15309 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoplot routine added.
ilb@NIH.GOV [Tue, 12 Dec 2017 19:44:22 +0000 (19:44 +0000)]
plot routine added.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15308 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoCorrected placement of tolLabel and tolText and modified requireLabel2.
ilb@NIH.GOV [Mon, 11 Dec 2017 22:07:10 +0000 (22:07 +0000)]
Corrected placement of tolLabel and tolText and modified requireLabel2.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15307 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoAdded else if (command.equals("PolygonsToAnnulus")) {
ilb@NIH.GOV [Mon, 11 Dec 2017 21:35:42 +0000 (21:35 +0000)]
Added else if (command.equals("PolygonsToAnnulus")) {
    new JDialogDoublyConnectedSC(this, getActiveImage());

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15306 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoAdded Between 2 polygons to annulus to Transformations tools menu.
ilb@NIH.GOV [Mon, 11 Dec 2017 21:32:42 +0000 (21:32 +0000)]
Added Between 2 polygons to annulus to Transformations tools menu.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15305 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoDialog created.
ilb@NIH.GOV [Mon, 11 Dec 2017 21:25:42 +0000 (21:25 +0000)]
Dialog created.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15304 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoEntered interface of mapping to MIPAV image in runAlgorithm.
ilb@NIH.GOV [Fri, 8 Dec 2017 22:58:17 +0000 (22:58 +0000)]
Entered interface of mapping to MIPAV image in runAlgorithm.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15303 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoIn runPolygonToCircle reduced size of zp put into dmap, in runCrossRatioPolygonToCirc...
ilb@NIH.GOV [Fri, 8 Dec 2017 22:43:06 +0000 (22:43 +0000)]
In runPolygonToCircle reduced size of zp put into dmap, in runCrossRatioPolygonToCircle reduced size of zp put into crmap, and in runPolygonExteriorToCircle reduced size of zp put into demap.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15302 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoSuccessful run on ninth test example.
ilb@NIH.GOV [Fri, 8 Dec 2017 20:11:53 +0000 (20:11 +0000)]
Successful run on ninth test example.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15301 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoSpelling correction.
ilb@NIH.GOV [Fri, 8 Dec 2017 19:31:10 +0000 (19:31 +0000)]
Spelling correction.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15300 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoEighth added test example works.
ilb@NIH.GOV [Fri, 8 Dec 2017 19:27:43 +0000 (19:27 +0000)]
Eighth added test example works.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15299 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoIn DSCDATA for IPOLY == 3 changed Z1[5][0] = 2.0 to Z1[5][1] = 2.0. All 7 examples...
ilb@NIH.GOV [Thu, 7 Dec 2017 22:49:29 +0000 (22:49 +0000)]
In DSCDATA for IPOLY == 3 changed Z1[5][0] = 2.0 to Z1[5][1] = 2.0.  All 7 examples now work.  For example 3 listed results agree with MIPAV results, maximum error = 8.06E-7, minimum error = 1.405E-8 even though INFO[0] = 5, unsuccessful exit.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15298 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoCorrected looping in IMTQL2. 6 of the 7 examples give good results. Example
ilb@NIH.GOV [Thu, 7 Dec 2017 22:13:56 +0000 (22:13 +0000)]
Corrected looping in IMTQL2.  6 of the 7 examples give good results.  Example
#3, A Heavily Crowded Region gives INFO[0] = 4, unsuccessful exit.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15297 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoset the progress bar quiet when read/write images.
ruida@NIH.GOV [Thu, 7 Dec 2017 15:43:56 +0000 (15:43 +0000)]
set the progress bar quiet when read/write images.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15296 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoAdded to the spreadsheet editor - user can add annotations or delete annotation throu...
abokinsky [Thu, 7 Dec 2017 02:14:11 +0000 (02:14 +0000)]
Added to the spreadsheet editor - user can add annotations or delete annotation through the spreadsheet.
Added the ability to turn on/off the worm 'model' display when creating lattices or adding annotations in the untwisting plugin.
Added pan feature to move the volume around for more precise zoom.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15295 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoAdded to spreadsheet interface for tracked annotations. Implemented independent track...
abokinsky [Wed, 6 Dec 2017 02:24:16 +0000 (02:24 +0000)]
Added to spreadsheet interface for tracked annotations. Implemented independent tracked annotations files for the two channel images.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15294 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoUpdated interface
mcmatt@NIH.GOV [Tue, 5 Dec 2017 22:35:07 +0000 (22:35 +0000)]
Updated interface

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15293 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoRemoved the limit on the appended number used when an image is registered with a...
mccreedy@NIH.GOV [Tue, 5 Dec 2017 21:42:41 +0000 (21:42 +0000)]
Removed the limit on the appended number used when an image is registered with a previously used base name.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15292 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoGreatly simplified by changing from AlgorithmTransform to AlgorithmRotate.
ilb@NIH.GOV [Tue, 5 Dec 2017 18:04:24 +0000 (18:04 +0000)]
Greatly simplified by changing from AlgorithmTransform to AlgorithmRotate.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15291 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoSpelling corrected in WDSC.
ilb@NIH.GOV [Mon, 4 Dec 2017 21:41:08 +0000 (21:41 +0000)]
Spelling corrected in WDSC.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15290 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoCheck-in deep learning related Knees and Prostate stuff.
ruida@NIH.GOV [Mon, 4 Dec 2017 20:17:23 +0000 (20:17 +0000)]
Check-in deep learning related Knees and Prostate stuff.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15289 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoIn HYBRD use parenthesis to make sure minus occurs before mod.
ilb@NIH.GOV [Fri, 1 Dec 2017 18:51:11 +0000 (18:51 +0000)]
In HYBRD use parenthesis to make sure minus occurs before mod.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15288 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoIn DSCSOLV changed if (ALFA0[I-1] >= 0.0) to if (ALFA0[I-1} > 0.0).
ilb@NIH.GOV [Thu, 30 Nov 2017 21:18:17 +0000 (21:18 +0000)]
In DSCSOLV changed if (ALFA0[I-1] >= 0.0) to if (ALFA0[I-1} > 0.0).

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15287 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoUpgrades to pairing of source DE to reference DE
mcmatt@NIH.GOV [Wed, 29 Nov 2017 23:35:12 +0000 (23:35 +0000)]
Upgrades to pairing of source DE to reference DE

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15286 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoRemoved unused int ISCR from QINIT.
ilb@NIH.GOV [Wed, 29 Nov 2017 20:46:51 +0000 (20:46 +0000)]
Removed unused int ISCR from QINIT.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15285 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoMinor changes to DOGLEG.
ilb@NIH.GOV [Wed, 29 Nov 2017 19:53:43 +0000 (19:53 +0000)]
Minor changes to DOGLEG.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15284 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoChanged NO to NOT in CHECK error message.
ilb@NIH.GOV [Wed, 29 Nov 2017 18:45:24 +0000 (18:45 +0000)]
Changed NO to NOT in CHECK error message.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15283 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoAdded comments, cleaned up code.
abokinsky [Wed, 29 Nov 2017 15:26:08 +0000 (15:26 +0000)]
Added comments, cleaned up code.
Fixed error when user selects 'display none' for the tracked annotations - now the stored file is deleted.
Added memory check for the GPU max image size and a memory check for the hyperstacks.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15282 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoInitial Manual editor for source DEs partially built
mcmatt@NIH.GOV [Tue, 28 Nov 2017 20:34:18 +0000 (20:34 +0000)]
Initial Manual editor for source DEs partially built

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15281 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoConnected K setting in WQUAD call in DSCTEST.
ilb@NIH.GOV [Tue, 28 Nov 2017 19:56:28 +0000 (19:56 +0000)]
Connected K setting in WQUAD call in DSCTEST.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15280 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoCorrected setting of KWA in DSCTEST.
ilb@NIH.GOV [Tue, 28 Nov 2017 19:45:53 +0000 (19:45 +0000)]
Corrected setting of KWA in DSCTEST.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15279 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoAdded missing closing parentheses in DSCPRINT.
ilb@NIH.GOV [Tue, 28 Nov 2017 17:41:32 +0000 (17:41 +0000)]
Added missing closing parentheses in DSCPRINT.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15278 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoIn WPROD changed W0[K] to W0[K-1] and W1[K] to W1[K-1].
ilb@NIH.GOV [Tue, 28 Nov 2017 17:28:10 +0000 (17:28 +0000)]
In WPROD changed W0[K] to W0[K-1] and W1[K] to W1[K-1].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15277 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoPorting continues.
ilb@NIH.GOV [Mon, 27 Nov 2017 21:58:53 +0000 (21:58 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15276 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoAdded tabbed panes and additional tooltips
mcmatt@NIH.GOV [Sun, 26 Nov 2017 15:22:59 +0000 (15:22 +0000)]
Added tabbed panes and additional tooltips

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15275 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoPorting continues.
ilb@NIH.GOV [Fri, 24 Nov 2017 23:14:23 +0000 (23:14 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15274 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoremoved many accessors to MIPAV utilities
mcmatt@NIH.GOV [Thu, 23 Nov 2017 16:23:42 +0000 (16:23 +0000)]
removed many accessors to MIPAV utilities

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15273 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoPorting continues.
ilb@NIH.GOV [Wed, 22 Nov 2017 23:13:09 +0000 (23:13 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15272 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoFixed error in annotation display when moving to the next image. Cleaned up code...
abokinsky [Wed, 22 Nov 2017 16:37:03 +0000 (16:37 +0000)]
Fixed error in annotation display when moving to the next image. Cleaned up code and added comments.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15271 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoBuilt dialog for loading source data elements from CSV file.
mcmatt@NIH.GOV [Tue, 21 Nov 2017 23:28:40 +0000 (23:28 +0000)]
Built dialog for loading source data elements from CSV file.
Also cleaned up unused code

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15270 ba61647d-9d00-f842-95cd-605cb4296b96

15 months agoAdded table display and editing of annotation positions for the tracking plugin.
abokinsky [Tue, 21 Nov 2017 22:45:05 +0000 (22:45 +0000)]
Added table display and editing of annotation positions for the tracking plugin.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk/mipav@15269 ba61647d-9d00-f842-95cd-605cb4296b96