mipav.git
8 years agomerged with 6801 version. svn/voi3d
abokinsky [Fri, 28 May 2010 15:50:03 +0000 (15:50 +0000)]
merged with 6801 version.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6802 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoSpeed up rendering/calculation of the levelset voi.
abokinsky [Thu, 27 May 2010 20:10:02 +0000 (20:10 +0000)]
Speed up rendering/calculation of the levelset voi.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6800 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed mouse interaction. Moving VOIs is faster. The mouse must be in the bounding...
abokinsky [Thu, 27 May 2010 16:40:09 +0000 (16:40 +0000)]
Fixed mouse interaction. Moving VOIs is faster. The mouse must be in the bounding box of the VOI to move it, or the bounding box of multiple selected VOIs. Cursor stays inside the VOI during drag this way.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6797 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agomerged with 6795
abokinsky [Thu, 27 May 2010 15:04:05 +0000 (15:04 +0000)]
merged with 6795

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6796 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated the fill volume for the x,y planes.
abokinsky [Wed, 26 May 2010 18:58:39 +0000 (18:58 +0000)]
Updated the fill volume for the x,y planes.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6792 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated shading calculation for tri-planar view. Matches faster mask calculation.
abokinsky [Wed, 26 May 2010 16:46:26 +0000 (16:46 +0000)]
Updated shading calculation for tri-planar view. Matches faster mask calculation.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6791 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agomerged with 6770+ changes.
abokinsky [Wed, 26 May 2010 16:31:54 +0000 (16:31 +0000)]
merged with 6770+ changes.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6790 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoupdated mask calculation
abokinsky [Wed, 26 May 2010 16:19:02 +0000 (16:19 +0000)]
updated mask calculation

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6788 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoChanged VOI mask calculation to scan-line algorithm.
abokinsky [Tue, 25 May 2010 18:10:23 +0000 (18:10 +0000)]
Changed VOI mask calculation to scan-line algorithm.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6782 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoremoved debugging printouts.
abokinsky [Mon, 24 May 2010 20:20:49 +0000 (20:20 +0000)]
removed debugging printouts.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6772 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agomerged with main mipav branch 6770
abokinsky [Mon, 24 May 2010 20:04:47 +0000 (20:04 +0000)]
merged with main mipav branch 6770

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6771 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed default pointer behavior.
abokinsky [Mon, 24 May 2010 19:51:56 +0000 (19:51 +0000)]
Fixed default pointer behavior.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6770 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated FRETAcceptorPhotobleach.
abokinsky [Mon, 24 May 2010 14:56:30 +0000 (14:56 +0000)]
Updated FRETAcceptorPhotobleach.
Fixed keyboard input for ViewJFrameImage VOI interaction.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6761 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agomerged with main mipav branch version 6759
abokinsky [Sat, 22 May 2010 20:17:37 +0000 (20:17 +0000)]
merged with main mipav branch version 6759

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6760 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed deprecated VOI functions. Updated algorithms and plugins for VOI with the z...
abokinsky [Sat, 22 May 2010 19:53:33 +0000 (19:53 +0000)]
Fixed deprecated VOI functions. Updated algorithms and plugins for VOI with the z-sorted array removed. Removed exportPolygons[] function. Updated exportPoints function.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6759 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoSped up VOI selection. Updated PlugInAlgorithmKidneySegmentation, PlugInAlgorithmSUV_PET.
abokinsky [Sat, 22 May 2010 16:36:51 +0000 (16:36 +0000)]
Sped up VOI selection. Updated PlugInAlgorithmKidneySegmentation, PlugInAlgorithmSUV_PET.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6758 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed slice-number bug. Should be an int not a float for the xml reader.
abokinsky [Fri, 21 May 2010 17:30:21 +0000 (17:30 +0000)]
Fixed slice-number bug. Should be an int not a float for the xml reader.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6749 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoAdded blended polygons to the VOI display.
abokinsky [Fri, 21 May 2010 16:50:47 +0000 (16:50 +0000)]
Added blended polygons to the VOI display.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6747 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoMerged with main mipav branch version 6745.
abokinsky [Fri, 21 May 2010 14:48:52 +0000 (14:48 +0000)]
Merged with main mipav branch version 6745.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6746 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated Plugins: CenterDistance, CenterDistance2, Fibroid, Drosophila.
abokinsky [Fri, 21 May 2010 14:28:18 +0000 (14:28 +0000)]
Updated Plugins: CenterDistance, CenterDistance2, Fibroid, Drosophila.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6745 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoAdded a few comments.
abokinsky [Thu, 20 May 2010 21:28:37 +0000 (21:28 +0000)]
Added a few comments.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6744 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated CtAbdomen. ready to test.
abokinsky [Thu, 20 May 2010 21:25:48 +0000 (21:25 +0000)]
Updated CtAbdomen. ready to test.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6743 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated CtAbdomen. ready to test.
abokinsky [Thu, 20 May 2010 19:44:23 +0000 (19:44 +0000)]
Updated CtAbdomen. ready to test.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6742 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated PlugInMuscleImageDisplay PlugInAlgorithmCTBone, Thigh, Marrow. Fixed contour...
abokinsky [Thu, 20 May 2010 18:11:51 +0000 (18:11 +0000)]
Updated PlugInMuscleImageDisplay PlugInAlgorithmCTBone, Thigh, Marrow. Fixed contour drawing (single-click on first and last points ends the line). Fixed livewire drawing. Fixed oval drawing to keep inside bounds. Changed trim to use default parameters. Fixed livewire icon.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6737 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed closed/open freehand VOI drawing. Fixed select/deselect VOI.
abokinsky [Tue, 18 May 2010 20:51:35 +0000 (20:51 +0000)]
Fixed closed/open freehand VOI drawing. Fixed select/deselect VOI.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6726 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoRemoved the exportPolygons from VOI. Updated JDialogLoadProstateMask.
abokinsky [Tue, 18 May 2010 16:17:56 +0000 (16:17 +0000)]
Removed the exportPolygons from VOI. Updated JDialogLoadProstateMask.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6723 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoMerged with trunk version 6721.
abokinsky [Tue, 18 May 2010 16:01:32 +0000 (16:01 +0000)]
Merged with trunk version 6721.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6722 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoremoved classes directory from svn
abokinsky [Tue, 18 May 2010 14:19:15 +0000 (14:19 +0000)]
removed classes directory from svn

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6720 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agocleanup for the 3D VOI task.
abokinsky [Fri, 14 May 2010 00:47:06 +0000 (00:47 +0000)]
cleanup for the 3D VOI task.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6707 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated AlgorithmProstateFeaturs for 3D VOI. Fixed registration bugs in 'Manual'...
abokinsky [Thu, 13 May 2010 18:34:12 +0000 (18:34 +0000)]
Updated AlgorithmProstateFeaturs for 3D VOI. Fixed registration bugs in 'Manual' series registration tools.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6703 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed the TriPlanar image align -- adding points and drawing the image align protract...
abokinsky [Thu, 13 May 2010 17:27:32 +0000 (17:27 +0000)]
Fixed the TriPlanar image align -- adding points and drawing the image align protractor. Sped up the rendering for the ViewJComponentEdit image -- was drawing the 3DVOI multiple times per frame.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6702 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed levelset not drawing. Fixed selected VOIContour showing selected points. QuickL...
abokinsky [Wed, 12 May 2010 20:28:31 +0000 (20:28 +0000)]
Fixed levelset not drawing. Fixed selected VOIContour showing selected points. QuickLUT is always yellow. Updated the 'Manual' registration for 2D and 3D images.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6695 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated AlgorithmLevelSet for the 3D VOI -- for 2D ModelImages.
abokinsky [Wed, 12 May 2010 00:04:01 +0000 (00:04 +0000)]
Updated AlgorithmLevelSet for the 3D VOI -- for 2D ModelImages.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6673 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated AlgorithmLevelSet for the 3D VOI.
abokinsky [Wed, 12 May 2010 00:01:28 +0000 (00:01 +0000)]
Updated AlgorithmLevelSet for the 3D VOI.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6672 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated AlgorithmAGVF, AlgorithmGVF, and AlgorithmSnake for the 3D VOI.
abokinsky [Tue, 11 May 2010 19:22:18 +0000 (19:22 +0000)]
Updated AlgorithmAGVF, AlgorithmGVF, and AlgorithmSnake for the 3D VOI.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6663 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated the JDialogVOIStatistics for VOIs defined in 2D images. Fixed bug in ViewJCom...
abokinsky [Mon, 10 May 2010 17:14:10 +0000 (17:14 +0000)]
Updated the JDialogVOIStatistics for VOIs defined in 2D images. Fixed bug in ViewJComponentEditImage getScannerPositionLabels for 2D images.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6650 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated Smoothing VOIs for the 3D VOI. Updated AlgorithmArcLength for 3D VOIs.
abokinsky [Mon, 10 May 2010 15:59:49 +0000 (15:59 +0000)]
Updated Smoothing VOIs for the 3D VOI. Updated AlgorithmArcLength for 3D VOIs.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6649 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoUpdated the shape interpolation for the 3D VOIs.
abokinsky [Sat, 8 May 2010 18:07:39 +0000 (18:07 +0000)]
Updated the shape interpolation for the 3D VOIs.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6648 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFinished factoring the AlgorithmVOIProps class. Added sort by contour only to the...
abokinsky [Thu, 6 May 2010 23:07:40 +0000 (23:07 +0000)]
Finished factoring the AlgorithmVOIProps class. Added sort by contour only to the JDialogStatistics.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6641 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed split line option to only split active VOIs.
abokinsky [Thu, 6 May 2010 20:06:32 +0000 (20:06 +0000)]
Fixed split line option to only split active VOIs.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6639 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFixed default pointer behavior. Fixed the screen-to-file functions for the tri-planar...
abokinsky [Thu, 6 May 2010 19:19:55 +0000 (19:19 +0000)]
Fixed default pointer behavior. Fixed the screen-to-file functions for the tri-planar view. Factored AlgorithmVOIProps.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6638 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoCreating branch for 3D VOI project.
abokinsky [Thu, 6 May 2010 03:47:02 +0000 (03:47 +0000)]
Creating branch for 3D VOI project.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6637 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoCreating 3DVOI branch
abokinsky [Thu, 6 May 2010 02:51:56 +0000 (02:51 +0000)]
Creating 3DVOI branch

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6636 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoCreated folder remotely
NIH\mccreedy [Tue, 4 May 2010 14:13:16 +0000 (14:13 +0000)]
Created folder remotely

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6631 ba61647d-9d00-f842-95cd-605cb4296b96

8 years agoFor Alexandra's voi refactoring
NIH\mccreedy [Tue, 4 May 2010 14:11:39 +0000 (14:11 +0000)]
For Alexandra's voi refactoring

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/branches/voi3d@6630 ba61647d-9d00-f842-95cd-605cb4296b96