mipav.git
16 months agoStarted debugging PARGEN.
ilb@NIH.GOV [Wed, 31 Jan 2018 23:08:32 +0000 (23:08 +0000)]
Started debugging PARGEN.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15356 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Tue, 30 Jan 2018 23:14:38 +0000 (23:14 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15355 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Mon, 29 Jan 2018 23:12:36 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15354 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoTracking plugin now automatically re-twists the annotations back to the original...
abokinsky [Sat, 27 Jan 2018 01:57:40 +0000 (01:57 +0000)]
Tracking plugin now automatically re-twists the annotations back to the original worm volume when the user presses 'done'.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15353 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Fri, 26 Jan 2018 23:13:40 +0000 (23:13 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15352 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Thu, 25 Jan 2018 23:12:28 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15351 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Wed, 24 Jan 2018 23:22:45 +0000 (23:22 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15350 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoAdded the resliced/rotated image option to the annotation tracking plugin and to...
abokinsky [Wed, 24 Jan 2018 00:13:56 +0000 (00:13 +0000)]
Added the resliced/rotated image option to the annotation tracking plugin and to the untwisted->twisted conversion plugin.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15349 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Tue, 23 Jan 2018 21:06:53 +0000 (21:06 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15348 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Fri, 19 Jan 2018 23:14:05 +0000 (23:14 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15347 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Thu, 18 Jan 2018 22:57:20 +0000 (22:57 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15346 ba61647d-9d00-f842-95cd-605cb4296b96

16 months agoPorting continues.
ilb@NIH.GOV [Wed, 17 Jan 2018 23:08:19 +0000 (23:08 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15345 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Tue, 16 Jan 2018 22:02:08 +0000 (22:02 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15344 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Fri, 12 Jan 2018 23:11:52 +0000 (23:11 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15343 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoAdded an image reslice and rotation option after straightening.
abokinsky [Fri, 12 Jan 2018 00:50:47 +0000 (00:50 +0000)]
Added an image reslice and rotation option after straightening.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15342 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Thu, 11 Jan 2018 23:09:40 +0000 (23:09 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15341 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoContinued updates
mcmatt@NIH.GOV [Thu, 11 Jan 2018 15:04:56 +0000 (15:04 +0000)]
Continued updates

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15340 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Wed, 10 Jan 2018 20:30:25 +0000 (20:30 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15339 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Tue, 9 Jan 2018 22:50:43 +0000 (22:50 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15338 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoConvert NIH prostate data to nii format
ruida@NIH.GOV [Tue, 9 Jan 2018 17:40:17 +0000 (17:40 +0000)]
Convert NIH prostate data to nii format

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15337 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Mon, 8 Jan 2018 23:15:06 +0000 (23:15 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15336 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Fri, 5 Jan 2018 23:13:24 +0000 (23:13 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15335 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoSignificant updates to the transform GUI
mcmatt@NIH.GOV [Fri, 5 Jan 2018 13:31:54 +0000 (13:31 +0000)]
Significant updates to the transform GUI

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15334 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Thu, 4 Jan 2018 23:12:55 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15333 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Wed, 3 Jan 2018 23:20:22 +0000 (23:20 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15332 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Tue, 2 Jan 2018 23:12:29 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15331 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoFinished saving mapping file to CSV
mcmatt@NIH.GOV [Sun, 31 Dec 2017 14:14:00 +0000 (14:14 +0000)]
Finished saving mapping file to CSV

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15330 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Fri, 29 Dec 2017 23:27:08 +0000 (23:27 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15329 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agopreparing to saving mapping file
mcmatt@NIH.GOV [Fri, 29 Dec 2017 14:17:56 +0000 (14:17 +0000)]
preparing to saving mapping file

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15328 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Thu, 28 Dec 2017 23:23:11 +0000 (23:23 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15327 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Wed, 27 Dec 2017 22:22:25 +0000 (22:22 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15326 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoComments through 1926
mcmatt@NIH.GOV [Wed, 27 Dec 2017 14:28:01 +0000 (14:28 +0000)]
Comments through 1926

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15325 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Tue, 26 Dec 2017 22:21:23 +0000 (22:21 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15324 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoCommented through line 1230
mcmatt@NIH.GOV [Tue, 26 Dec 2017 15:27:24 +0000 (15:27 +0000)]
Commented through line 1230

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15323 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoUpdated row widths
mcmatt@NIH.GOV [Sun, 24 Dec 2017 16:58:48 +0000 (16:58 +0000)]
Updated row widths

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15322 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoMore updates to the PV Mappings editor
mcmatt@NIH.GOV [Sun, 24 Dec 2017 16:52:01 +0000 (16:52 +0000)]
More updates to the PV Mappings editor

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15321 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Fri, 22 Dec 2017 23:12:14 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15320 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoUpdates to the Mapping PVs column
mcmatt@NIH.GOV [Thu, 21 Dec 2017 22:13:16 +0000 (22:13 +0000)]
Updates to the Mapping PVs column

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15319 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Thu, 21 Dec 2017 21:58:34 +0000 (21:58 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15318 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoSignificant updates to the mapping tool.
mcmatt@NIH.GOV [Wed, 20 Dec 2017 23:33:01 +0000 (23:33 +0000)]
Significant updates to the mapping tool.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15317 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Wed, 20 Dec 2017 23:21:28 +0000 (23:21 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15316 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoconvert miccai promise 12 data from mgh to nii.gz
ruida@NIH.GOV [Wed, 20 Dec 2017 22:38:41 +0000 (22:38 +0000)]
convert miccai promise 12 data from mgh to nii.gz

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15315 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Tue, 19 Dec 2017 23:12:00 +0000 (23:12 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15314 ba61647d-9d00-f842-95cd-605cb4296b96

17 months agoPorting continues.
ilb@NIH.GOV [Mon, 18 Dec 2017 23:16:36 +0000 (23:16 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15313 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoPorting continues.
ilb@NIH.GOV [Fri, 15 Dec 2017 23:17:23 +0000 (23:17 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15312 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoWork started.
ilb@NIH.GOV [Thu, 14 Dec 2017 23:17:44 +0000 (23:17 +0000)]
Work started.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15311 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agofix a typo for imageOrientation calling
ruida@NIH.GOV [Tue, 12 Dec 2017 22:08:53 +0000 (22:08 +0000)]
fix a typo for imageOrientation calling

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15310 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoComments corrected.
ilb@NIH.GOV [Tue, 12 Dec 2017 21:30:56 +0000 (21:30 +0000)]
Comments corrected.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15309 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoplot routine added.
ilb@NIH.GOV [Tue, 12 Dec 2017 19:44:22 +0000 (19:44 +0000)]
plot routine added.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15308 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoCorrected placement of tolLabel and tolText and modified requireLabel2.
ilb@NIH.GOV [Mon, 11 Dec 2017 22:07:10 +0000 (22:07 +0000)]
Corrected placement of tolLabel and tolText and modified requireLabel2.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15307 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded else if (command.equals("PolygonsToAnnulus")) {
ilb@NIH.GOV [Mon, 11 Dec 2017 21:35:42 +0000 (21:35 +0000)]
Added else if (command.equals("PolygonsToAnnulus")) {
    new JDialogDoublyConnectedSC(this, getActiveImage());

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15306 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded Between 2 polygons to annulus to Transformations tools menu.
ilb@NIH.GOV [Mon, 11 Dec 2017 21:32:42 +0000 (21:32 +0000)]
Added Between 2 polygons to annulus to Transformations tools menu.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15305 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoDialog created.
ilb@NIH.GOV [Mon, 11 Dec 2017 21:25:42 +0000 (21:25 +0000)]
Dialog created.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15304 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoEntered interface of mapping to MIPAV image in runAlgorithm.
ilb@NIH.GOV [Fri, 8 Dec 2017 22:58:17 +0000 (22:58 +0000)]
Entered interface of mapping to MIPAV image in runAlgorithm.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15303 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoIn runPolygonToCircle reduced size of zp put into dmap, in runCrossRatioPolygonToCirc...
ilb@NIH.GOV [Fri, 8 Dec 2017 22:43:06 +0000 (22:43 +0000)]
In runPolygonToCircle reduced size of zp put into dmap, in runCrossRatioPolygonToCircle reduced size of zp put into crmap, and in runPolygonExteriorToCircle reduced size of zp put into demap.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15302 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoSuccessful run on ninth test example.
ilb@NIH.GOV [Fri, 8 Dec 2017 20:11:53 +0000 (20:11 +0000)]
Successful run on ninth test example.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15301 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoSpelling correction.
ilb@NIH.GOV [Fri, 8 Dec 2017 19:31:10 +0000 (19:31 +0000)]
Spelling correction.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15300 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoEighth added test example works.
ilb@NIH.GOV [Fri, 8 Dec 2017 19:27:43 +0000 (19:27 +0000)]
Eighth added test example works.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15299 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoIn DSCDATA for IPOLY == 3 changed Z1[5][0] = 2.0 to Z1[5][1] = 2.0. All 7 examples...
ilb@NIH.GOV [Thu, 7 Dec 2017 22:49:29 +0000 (22:49 +0000)]
In DSCDATA for IPOLY == 3 changed Z1[5][0] = 2.0 to Z1[5][1] = 2.0.  All 7 examples now work.  For example 3 listed results agree with MIPAV results, maximum error = 8.06E-7, minimum error = 1.405E-8 even though INFO[0] = 5, unsuccessful exit.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15298 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoCorrected looping in IMTQL2. 6 of the 7 examples give good results. Example
ilb@NIH.GOV [Thu, 7 Dec 2017 22:13:56 +0000 (22:13 +0000)]
Corrected looping in IMTQL2.  6 of the 7 examples give good results.  Example
#3, A Heavily Crowded Region gives INFO[0] = 4, unsuccessful exit.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15297 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoset the progress bar quiet when read/write images.
ruida@NIH.GOV [Thu, 7 Dec 2017 15:43:56 +0000 (15:43 +0000)]
set the progress bar quiet when read/write images.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15296 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded to the spreadsheet editor - user can add annotations or delete annotation throu...
abokinsky [Thu, 7 Dec 2017 02:14:11 +0000 (02:14 +0000)]
Added to the spreadsheet editor - user can add annotations or delete annotation through the spreadsheet.
Added the ability to turn on/off the worm 'model' display when creating lattices or adding annotations in the untwisting plugin.
Added pan feature to move the volume around for more precise zoom.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15295 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded to spreadsheet interface for tracked annotations. Implemented independent track...
abokinsky [Wed, 6 Dec 2017 02:24:16 +0000 (02:24 +0000)]
Added to spreadsheet interface for tracked annotations. Implemented independent tracked annotations files for the two channel images.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15294 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoUpdated interface
mcmatt@NIH.GOV [Tue, 5 Dec 2017 22:35:07 +0000 (22:35 +0000)]
Updated interface

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15293 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoRemoved the limit on the appended number used when an image is registered with a...
mccreedy@NIH.GOV [Tue, 5 Dec 2017 21:42:41 +0000 (21:42 +0000)]
Removed the limit on the appended number used when an image is registered with a previously used base name.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15292 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoGreatly simplified by changing from AlgorithmTransform to AlgorithmRotate.
ilb@NIH.GOV [Tue, 5 Dec 2017 18:04:24 +0000 (18:04 +0000)]
Greatly simplified by changing from AlgorithmTransform to AlgorithmRotate.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15291 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoSpelling corrected in WDSC.
ilb@NIH.GOV [Mon, 4 Dec 2017 21:41:08 +0000 (21:41 +0000)]
Spelling corrected in WDSC.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15290 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoCheck-in deep learning related Knees and Prostate stuff.
ruida@NIH.GOV [Mon, 4 Dec 2017 20:17:23 +0000 (20:17 +0000)]
Check-in deep learning related Knees and Prostate stuff.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15289 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoIn HYBRD use parenthesis to make sure minus occurs before mod.
ilb@NIH.GOV [Fri, 1 Dec 2017 18:51:11 +0000 (18:51 +0000)]
In HYBRD use parenthesis to make sure minus occurs before mod.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15288 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoIn DSCSOLV changed if (ALFA0[I-1] >= 0.0) to if (ALFA0[I-1} > 0.0).
ilb@NIH.GOV [Thu, 30 Nov 2017 21:18:17 +0000 (21:18 +0000)]
In DSCSOLV changed if (ALFA0[I-1] >= 0.0) to if (ALFA0[I-1} > 0.0).

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15287 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoUpgrades to pairing of source DE to reference DE
mcmatt@NIH.GOV [Wed, 29 Nov 2017 23:35:12 +0000 (23:35 +0000)]
Upgrades to pairing of source DE to reference DE

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15286 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoRemoved unused int ISCR from QINIT.
ilb@NIH.GOV [Wed, 29 Nov 2017 20:46:51 +0000 (20:46 +0000)]
Removed unused int ISCR from QINIT.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15285 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoMinor changes to DOGLEG.
ilb@NIH.GOV [Wed, 29 Nov 2017 19:53:43 +0000 (19:53 +0000)]
Minor changes to DOGLEG.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15284 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoChanged NO to NOT in CHECK error message.
ilb@NIH.GOV [Wed, 29 Nov 2017 18:45:24 +0000 (18:45 +0000)]
Changed NO to NOT in CHECK error message.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15283 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded comments, cleaned up code.
abokinsky [Wed, 29 Nov 2017 15:26:08 +0000 (15:26 +0000)]
Added comments, cleaned up code.
Fixed error when user selects 'display none' for the tracked annotations - now the stored file is deleted.
Added memory check for the GPU max image size and a memory check for the hyperstacks.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15282 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoInitial Manual editor for source DEs partially built
mcmatt@NIH.GOV [Tue, 28 Nov 2017 20:34:18 +0000 (20:34 +0000)]
Initial Manual editor for source DEs partially built

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15281 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoConnected K setting in WQUAD call in DSCTEST.
ilb@NIH.GOV [Tue, 28 Nov 2017 19:56:28 +0000 (19:56 +0000)]
Connected K setting in WQUAD call in DSCTEST.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15280 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoCorrected setting of KWA in DSCTEST.
ilb@NIH.GOV [Tue, 28 Nov 2017 19:45:53 +0000 (19:45 +0000)]
Corrected setting of KWA in DSCTEST.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15279 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded missing closing parentheses in DSCPRINT.
ilb@NIH.GOV [Tue, 28 Nov 2017 17:41:32 +0000 (17:41 +0000)]
Added missing closing parentheses in DSCPRINT.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15278 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoIn WPROD changed W0[K] to W0[K-1] and W1[K] to W1[K-1].
ilb@NIH.GOV [Tue, 28 Nov 2017 17:28:10 +0000 (17:28 +0000)]
In WPROD changed W0[K] to W0[K-1] and W1[K] to W1[K-1].

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15277 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoPorting continues.
ilb@NIH.GOV [Mon, 27 Nov 2017 21:58:53 +0000 (21:58 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15276 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded tabbed panes and additional tooltips
mcmatt@NIH.GOV [Sun, 26 Nov 2017 15:22:59 +0000 (15:22 +0000)]
Added tabbed panes and additional tooltips

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15275 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoPorting continues.
ilb@NIH.GOV [Fri, 24 Nov 2017 23:14:23 +0000 (23:14 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15274 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoremoved many accessors to MIPAV utilities
mcmatt@NIH.GOV [Thu, 23 Nov 2017 16:23:42 +0000 (16:23 +0000)]
removed many accessors to MIPAV utilities

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15273 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoPorting continues.
ilb@NIH.GOV [Wed, 22 Nov 2017 23:13:09 +0000 (23:13 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15272 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoFixed error in annotation display when moving to the next image. Cleaned up code...
abokinsky [Wed, 22 Nov 2017 16:37:03 +0000 (16:37 +0000)]
Fixed error in annotation display when moving to the next image. Cleaned up code and added comments.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15271 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoBuilt dialog for loading source data elements from CSV file.
mcmatt@NIH.GOV [Tue, 21 Nov 2017 23:28:40 +0000 (23:28 +0000)]
Built dialog for loading source data elements from CSV file.
Also cleaned up unused code

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15270 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded table display and editing of annotation positions for the tracking plugin.
abokinsky [Tue, 21 Nov 2017 22:45:05 +0000 (22:45 +0000)]
Added table display and editing of annotation positions for the tracking plugin.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15269 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoPorting continues.
ilb@NIH.GOV [Tue, 21 Nov 2017 20:34:43 +0000 (20:34 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15268 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoPorting continuues.
ilb@NIH.GOV [Mon, 20 Nov 2017 23:12:47 +0000 (23:12 +0000)]
Porting continuues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15267 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoStarting work on building source data elements dialog
mcmatt@NIH.GOV [Mon, 20 Nov 2017 22:56:13 +0000 (22:56 +0000)]
Starting work on building source data elements dialog

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15266 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoAdded hyperstacks to the tracking annotations plugin so it's easier to go back and...
abokinsky [Mon, 20 Nov 2017 18:05:18 +0000 (18:05 +0000)]
Added hyperstacks to the tracking annotations plugin so it's easier to go back and forth between images. Saves and restores LUTs for each image so images look the same. Loads and saves annotations in progress to files and allows user changes to annotations for easier comparisons and tracking changes between images. Works for both single and two-channel worm images.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15265 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoMore updates
mcmatt@NIH.GOV [Sun, 19 Nov 2017 19:57:46 +0000 (19:57 +0000)]
More updates

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15264 ba61647d-9d00-f842-95cd-605cb4296b96

18 months agoPorting continues.
ilb@NIH.GOV [Fri, 17 Nov 2017 23:10:35 +0000 (23:10 +0000)]
Porting continues.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15263 ba61647d-9d00-f842-95cd-605cb4296b96

19 months agoPorting code.
ilb@NIH.GOV [Thu, 16 Nov 2017 22:22:57 +0000 (22:22 +0000)]
Porting code.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15262 ba61647d-9d00-f842-95cd-605cb4296b96

19 months agoUpdated copyright notices with info on jars moved from bundled JREs to native lib...
mccreedy@NIH.GOV [Thu, 16 Nov 2017 21:54:09 +0000 (21:54 +0000)]
Updated copyright notices with info on jars moved from bundled JREs to native lib jars.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15261 ba61647d-9d00-f842-95cd-605cb4296b96

19 months agoMore update to phase one.
mcmatt@NIH.GOV [Thu, 16 Nov 2017 19:15:03 +0000 (19:15 +0000)]
More update to phase one.
Starting write code to load source CSV file.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15260 ba61647d-9d00-f842-95cd-605cb4296b96

19 months agoStarting work on.
ilb@NIH.GOV [Wed, 15 Nov 2017 23:03:56 +0000 (23:03 +0000)]
Starting work on.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15259 ba61647d-9d00-f842-95cd-605cb4296b96

19 months agoAdded error displays for debugging the annotation plugin csv file loading. Added...
abokinsky [Wed, 15 Nov 2017 21:12:36 +0000 (21:12 +0000)]
Added error displays for debugging the annotation plugin csv file loading. Added reseting the viewing axis in the -X direction.

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15258 ba61647d-9d00-f842-95cd-605cb4296b96

19 months agoPrep for version 8.0.0
mccreedy@NIH.GOV [Wed, 15 Nov 2017 15:47:22 +0000 (15:47 +0000)]
Prep for version 8.0.0

git-svn-id: https://citdcbmipav.cit.nih.gov/repos-pub/mipav/trunk@15257 ba61647d-9d00-f842-95cd-605cb4296b96